AS-ALPS (Alternative Splicing - ALteration of Protein Structure) statistics of ver. 1.6 Dataset :
Quick Search : for
(e.g. NM_000589, NM_002654, HIT000001802) (e.g. IL4, PKM2, LYPLA1) (e.g. 3565, 5315, 10434) (e.g. NM_010207, PK00003M14) (e.g. Fgfr2, Plec1) (e.g. 14183, 18810) (e.g. MK09_MOUSE, PCLO_RAT) (e.g. Mapk9, pclo)
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AS Detection
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Search by annotation
DataSet:
Protein name-related keywords (e.g. dna binding)
Domain name-related keywords (e.g. WD40 repeat-like)
Attributes of AS regions (regions of amino acid sequences changed by AS)
      Position
  Type
 3D structure
    Inclusion of hydrophobic core residues
Inclusion of interaction sites with -

Conservation between human and mouse
KEGG pathway-related keywords (e.g. glycolysis)

 

Check this if you prefer to include probably artifactual AS genes together in the list.

Search AS variant clusters by sequence
DataSet:  
Enter a query amino acid sequence in FASTA format:

 

Check this if you prefer to include probably artifactual AS genes together in the list.

Search AS variant clusters by 3D structure
DataSet:
PDB entry ID and chain ID: (e.g. 1itlA, 1fj2A)
Threshold of sequence identity:
Threshold of PDB sequence coverage:

 

Check this if you prefer to include probably artifactual AS genes together in the list.

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