Data source used in AS-ALPS
Transcript data for input
|
NCBI Genome |
NCBI RefSeq mRNA |
FlcDNA * |
total |
version |
No. of data |
version |
No. of data |
version |
human |
build36.3 |
|
Feb. 2009 |
0 |
H-InvDB 6.0 |
0 |
mouse |
build37.1 |
|
Jan. 2008 |
0 |
FANTOM3 |
0 |
*: Dataset of Human FlcDNA includes sequences extracted from International Nucleotide Sequence Database.
|
version |
total AS isoforms |
Swiss-Prot |
Release 2010_12 |
0 |
Database for annotaion
PDB |
InterPro |
CAGE |
Nov. 1, 2010 |
Version 23.0 |
March 27, 2009 |
Selected dataset
human
|
No. |
% |
AS variant clusters |
13134 |
|
AS variant clusters annotated with PDB data |
5922 |
45.1 % |
Unique AS regions |
37789 |
|
Unique AS regions annotated with PDB data |
11905 |
31.5 % |
|
N-ter. |
middle |
C-ter. |
total |
deletion |
4697 | 12.4 % |
8985 | 23.8 % |
1778 | 4.7 % |
15460 | 40.9 % |
insertion |
1112 | 2.9 % |
2838 | 7.5 % |
523 | 1.4 % |
4473 | 11.8 % |
substitution |
3711 | 9.8 % |
1074 | 2.8 % |
13071 | 34.6 % |
17856 | 47.3 % |
total |
9520 | 25.2 % |
12897 | 34.1 % |
15372 | 40.7 % |
37789 | 100.0 % |
mouse
|
No. |
% |
AS variant clusters |
8900 |
|
AS variant clusters annotated with PDB data |
2966 |
33.3 % |
Unique AS regions |
16873 |
|
Unique AS regions annotated with PDB data |
4101 |
24.3 % |
|
N-ter. |
middle |
C-ter. |
total |
deletion |
3530 | 20.9 % |
2916 | 17.3 % |
1269 | 7.5 % |
7715 | 45.7 % |
insertion |
1073 | 6.4 % |
1291 | 7.7 % |
1101 | 6.5 % |
3465 | 20.5 % |
substitution |
1132 | 6.7 % |
308 | 1.8 % |
4253 | 25.2 % |
5693 | 33.7 % |
total |
5735 | 34.0 % |
4515 | 26.8 % |
6623 | 39.3 % |
16873 | 100.0 % |
Swiss-Prot
|
No. |
% |
AS variant clusters |
9725 |
|
AS variant clusters annotated with PDB data |
4090 |
42.1 % |
Unique AS regions |
17072 |
|
Unique AS regions annotated with PDB data |
5711 |
33.5 % |
|
N-ter. |
middle |
C-ter. |
total |
deletion |
2569 | 15.0 % |
5301 | 31.1 % |
472 | 2.8 % |
8342 | 48.9 % |
insertion |
211 | 1.2 % |
1016 | 6.0 % |
42 | 0.2 % |
1269 | 7.4 % |
substitution |
1707 | 10.0 % |
1232 | 7.2 % |
4522 | 26.5 % |
7461 | 43.7 % |
total |
4487 | 26.3 % |
7549 | 44.2 % |
5036 | 29.5 % |
17072 | 100.0 % |
- In human and mouse dataset, AS regions detected from incomplete CDS termius are excluded.
- In Swiss-Prot dataset, AS regions with no experimental confirmation are excluded.
All dataset
human
|
No. |
% |
AS variant clusters |
15316 |
|
AS variant clusters annotated with PDB data |
8036 |
52.5 % |
Unique AS regions |
74474 |
|
Unique AS regions annotated with PDB data |
25933 |
34.8 % |
|
N-ter. |
middle |
C-ter. |
total |
deletion |
24219 | 32.5 % |
8985 | 12.1 % |
8624 | 11.6 % |
41828 | 56.2 % |
insertion |
1584 | 2.1 % |
2838 | 3.8 % |
547 | 0.7 % |
4969 | 6.7 % |
substitution |
13007 | 17.5 % |
1074 | 1.4 % |
13596 | 18.3 % |
27677 | 37.2 % |
total |
38810 | 52.1 % |
12897 | 17.3 % |
22767 | 30.6 % |
74474 | 100.0 % |
mouse
|
No. |
% |
AS variant clusters |
10427 |
|
AS variant clusters annotated with PDB data |
4272 |
41.0 % |
Unique AS regions |
23897 |
|
Unique AS regions annotated with PDB data |
6865 |
28.7 % |
|
N-ter. |
middle |
C-ter. |
total |
deletion |
6734 | 28.2 % |
2916 | 12.2 % |
4200 | 17.6 % |
13850 | 58.0 % |
insertion |
1283 | 5.4 % |
1291 | 5.4 % |
1128 | 4.7 % |
3702 | 15.5 % |
substitution |
1566 | 6.6 % |
308 | 1.3 % |
4471 | 18.7 % |
6345 | 26.6 % |
total |
9583 | 40.1 % |
4515 | 18.9 % |
9799 | 41.0 % |
23897 | 100.0 % |
Swiss-Prot
|
No. |
% |
AS variant clusters |
12648 |
|
AS variant clusters annotated with PDB data |
5819 |
46.0 % |
Unique AS regions |
21517 |
|
Unique AS regions annotated with PDB data |
8322 |
38.7 % |
|
N-ter. |
middle |
C-ter. |
total |
deletion |
2569 | 11.9 % |
8256 | 38.4 % |
472 | 2.2 % |
11297 | 52.5 % |
insertion |
211 | 1.0 % |
1834 | 8.5 % |
42 | 0.2 % |
2087 | 9.7 % |
substitution |
1707 | 7.9 % |
1904 | 8.8 % |
4522 | 21.0 % |
8133 | 37.8 % |
total |
4487 | 20.9 % |
11994 | 55.7 % |
5036 | 23.4 % |
21517 | 100.0 % |
ASALPS::print_footer(1);
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