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Version: 1.6.1
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Quick Guide
Human
Mouse
Swiss-Prot
Transcript ID
Gene Symbol
Entrez Gene ID
for
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Advanced Search
(e.g. NM_000589, NM_002654, HIT000001802)
(e.g. IL4, PKM2, LYPLA1)
(e.g. 3565, 5315, 10434)
(e.g. NM_010207, PX00698M05)
(e.g. Fgfr2, Ctps2)
(e.g. 14183, 55936)
(e.g. MK09_MOUSE, PCLO_RAT)
(e.g. Mapk9, pclo)
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-> Advanced Search
Search by annotation
DataSet:
Human
Mouse
Swiss-Prot
Protein name-related keywords:
(e.g. dna binding)
Domain name-related keywords:
(e.g. WD40 repeat-like)
Attributes of AS regions (regions of amino acid sequences changed by AS)
Position:
N-terminal
Middle
C-terminal
Type:
Insertion/Deletion
Substitution
3D structure:
Available
Not available
Inclusion of hydrophobic core residues:
Yes
Inclusion of interaction sites with:
Protein
DNA/RNA
Ligand/Substrate
AND
OR
Conservation between human and mouse:
Yes
KEGG pathway-related keywords:
(e.g. glycolysis)
Options: Search
AS variant clusters
AS regions
include probably artifactual AS genes together in the list.
Search by sequence
DataSet:
Human
Mouse
Swiss-Prot
Enter a query amino acid sequence in FASTA format:
Options:
Clear cache data
include probably artifactual AS genes together in the list.
Search AS variant clusters by 3D structure
DataSet:
Human
Mouse
Swiss-Prot
PDB entry ID and chain ID:
(e.g. 1itlA, 1fj2A)
Threshold of sequence identity:
95 %
100 %
90 %
80 %
70 %
Threshold of PDB sequence coverage:
95 %
100 %
90 %
80 %
70 %
Options:
include probably artifactual AS genes together in the list.
