AS-ALPS (Alternative Splicing - ALteration of Protein Structure)
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    • (e.g. NM_000589, NM_002654, HIT000001802)
    • (e.g. IL4, PKM2, LYPLA1)
    • (e.g. 3565, 5315, 10434)
    • (e.g. NM_010207, PX00698M05)
    • (e.g. Fgfr2, Ctps2)
    • (e.g. 14183, 55936)
    • (e.g. MK09_MOUSE, PCLO_RAT)
    • (e.g. Mapk9, pclo)
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Search by annotation

  • DataSet:  
  • Protein name-related keywords:   (e.g. dna binding)
  • Domain name-related keywords:   (e.g. WD40 repeat-like)
  • Attributes of AS regions (regions of amino acid sequences changed by AS)
    •      
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    •    
      • Inclusion of hydrophobic core residues:  
      • Inclusion of interaction sites with:          
  • Conservation between human and mouse: 
  • KEGG pathway-related keywords:  (e.g. glycolysis)
  • Options:   Search   include probably artifactual AS genes together in the list.
  •   

Search by sequence

  • DataSet:  
  • Enter a query amino acid sequence in FASTA format:
  • Options:   Clear cache data   include probably artifactual AS genes together in the list.
  •   

Search AS variant clusters by 3D structure

  • DataSet:  
  • PDB entry ID and chain ID:   (e.g. 1itlA, 1fj2A)
  • Threshold of sequence identity:      Threshold of PDB sequence coverage:  
  • Options:   include probably artifactual AS genes together in the list.
  •   
Nagahama Institute of Bio-Science and Technology