ver. 1.5
Dataset :
Human
Mouse
Swiss-Prot
Quick Search :
Transcript ID
Entrez Gene ID
for
(e.g. NM_000589, HIT000001802)
(e.g. NM_010207, PK00003M14)
(e.g. MK09_MOUSE)
Advanced Search
AS Detection
QuickGuide :
(pdf)
,
(html)
Top
-> Advanced Search
Search
AS variant clusters
AS regions
by annotation
DataSet:
Human
Mouse
Swiss-Prot
Protein name-related keywords
(e.g. dna binding)
Domain name-related keywords
(e.g. WD40 repeat-like)
Attributes of AS regions (regions of amino acid sequences changed by AS)
Position
N-terminal
Middle
C-terminal
Type
Insertion/Deletion
Substitution
3D structure
Available
Inclusion of hydrophobic core residues
Yes
Inclusion of interaction sites with -
Protein
DNA/RNA
Ligand/Substrate
AND
OR
Not available
Conservation between human and mouse
Yes
KEGG pathway-related keywords
(e.g. glycolysis)
Check this
if you prefer to include probably artifactual AS genes together in the list.
Search AS variant clusters by sequence
DataSet:
Human
Mouse
Swiss-Prot
Enter a query amino acid sequence in FASTA format:
Check this
if you prefer to include probably artifactual AS genes together in the list.
Search AS variant clusters by 3D structure
DataSet:
Human
Mouse
Swiss-Prot
PDB entry ID and chain ID:
(e.g. 1hik-, 1fj2A)
Threshold of sequence identity:
95 %
100 %
90 %
80 %
70 %
Threshold of PDB sequence coverage:
95 %
100 %
90 %
80 %
70 %
Check this
if you prefer to include probably artifactual AS genes together in the list.