Genome | NCBI RefSeq mRNA | other transcript data | total | |||
---|---|---|---|---|---|---|
version | No. of data | version | No. of data | data source | ||
H.sapiens | GRCh38 | NCBI genome 106 | 0 | Ensembl rel. 78 | 0 | |
M.musculus | GRCm38 | NCBI genome 104 | 0 | Ensembl rel. 78 | 0 | |
D.melanogaster | BDGP5 | NCBI RefSeq rel.71 | 0 | Ensembl rel. 78 | 0 | |
C.elegans | WBcel235 | NCBI RefSeq rel.71 | 0 | Ensembl rel. 78 | 0 | |
A.thaliana | TAIR 10 | NCBI RefSeq rel.71 | 0 | Ensembl Genome rel.28 | 0 | |
O.sativa | IRGSP-1.0 | NCBI RefSeq rel.71 | 0 | Ensembl Genome rel.28 | 0 |
version | total AS isoforms | |
---|---|---|
Swiss-Prot | Release 2015/02 | 0 |
PDB | InterPro | KEGG | GEO |
---|---|---|---|
Feb. 2, 2015 | Version 51.0 | Jul. 22, 2015 | GSE30611 |
PeptideAtlas | |||
H.sapiens | M.musculus | D.melanogaster | C.elegans |
Mar., 2015 | Dec., 2014 | Aug., 2012 | Sep., 2013 |
No. | % | |
---|---|---|
AS variant clusters | 13138 | |
AS variant clusters annotated with PDB data | 7002 | 53.3 % |
Unique AS regions | 38719 | |
Unique AS regions annotated with PDB data | 15825 | 40.9 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 5848 | 15.1 % | 9378 | 24.2 % | 660 | 1.7 % | 15886 | 41.0 % |
insertion | 554 | 1.4 % | 2553 | 6.6 % | 131 | 0.3 % | 3238 | 8.4 % |
substitution | 3390 | 8.8 % | 1053 | 2.7 % | 15152 | 39.1 % | 19595 | 50.6 % |
total | 9792 | 25.3 % | 12984 | 33.5 % | 15943 | 41.2 % | 38719 | 100.0 % |
No. | % | |
---|---|---|
AS variant clusters | 8633 | |
AS variant clusters annotated with PDB data | 3969 | 46.0 % |
Unique AS regions | 17596 | |
Unique AS regions annotated with PDB data | 6424 | 36.5 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 2074 | 11.8 % | 4488 | 25.5 % | 366 | 2.1 % | 6928 | 39.4 % |
insertion | 495 | 2.8 % | 1602 | 9.1 % | 53 | 0.3 % | 2150 | 12.2 % |
substitution | 1437 | 8.2 % | 544 | 3.1 % | 6537 | 37.2 % | 8518 | 48.4 % |
total | 4006 | 22.8 % | 6634 | 37.7 % | 6956 | 39.5 % | 17596 | 100.0 % |
No. | % | |
---|---|---|
AS variant clusters | 3628 | |
AS variant clusters annotated with PDB data | 1071 | 29.5 % |
Unique AS regions | 7093 | |
Unique AS regions annotated with PDB data | 1551 | 21.9 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 985 | 13.9 % | 1984 | 28.0 % | 135 | 1.9 % | 3104 | 43.8 % |
insertion | 260 | 3.7 % | 879 | 12.4 % | 181 | 2.6 % | 1320 | 18.6 % |
substitution | 918 | 12.9 % | 258 | 3.6 % | 1493 | 21.0 % | 2669 | 37.6 % |
total | 2163 | 30.5 % | 3121 | 44.0 % | 1809 | 25.5 % | 7093 | 100.0 % |
No. | % | |
---|---|---|
AS variant clusters | 4002 | |
AS variant clusters annotated with PDB data | 1112 | 27.8 % |
Unique AS regions | 6584 | |
Unique AS regions annotated with PDB data | 1484 | 22.5 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 2314 | 35.1 % | 1440 | 21.9 % | 36 | 0.5 % | 3790 | 57.6 % |
insertion | 113 | 1.7 % | 395 | 6.0 % | 7 | 0.1 % | 515 | 7.8 % |
substitution | 896 | 13.6 % | 169 | 2.6 % | 1214 | 18.4 % | 2279 | 34.6 % |
total | 3323 | 50.5 % | 2004 | 30.4 % | 1257 | 19.1 % | 6584 | 100.0 % |
No. | % | |
---|---|---|
AS variant clusters | 4278 | |
AS variant clusters annotated with PDB data | 1662 | 38.8 % |
Unique AS regions | 5706 | |
Unique AS regions annotated with PDB data | 2053 | 36.0 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 684 | 12.0 % | 1577 | 27.6 % | 48 | 0.8 % | 2309 | 40.5 % |
insertion | 144 | 2.5 % | 814 | 14.3 % | 20 | 0.4 % | 978 | 17.1 % |
substitution | 492 | 8.6 % | 289 | 5.1 % | 1638 | 28.7 % | 2419 | 42.4 % |
total | 1320 | 23.1 % | 2680 | 47.0 % | 1706 | 29.9 % | 5706 | 100.0 % |
No. | % | |
---|---|---|
AS variant clusters | 5075 | |
AS variant clusters annotated with PDB data | 1773 | 34.9 % |
Unique AS regions | 6951 | |
Unique AS regions annotated with PDB data | 2128 | 30.6 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 420 | 6.0 % | 693 | 10.0 % | 53 | 0.8 % | 1166 | 16.8 % |
insertion | 451 | 6.5 % | 591 | 8.5 % | 45 | 0.6 % | 1087 | 15.6 % |
substitution | 716 | 10.3 % | 1222 | 17.6 % | 2760 | 39.7 % | 4698 | 67.6 % |
total | 1587 | 22.8 % | 2506 | 36.1 % | 2858 | 41.1 % | 6951 | 100.0 % |
No. | % | |
---|---|---|
AS variant clusters | 20504 | |
AS variant clusters annotated with PDB data | 9156 | 44.7 % |
Unique AS regions | 38160 | |
Unique AS regions annotated with PDB data | 13762 | 36.1 % |
N-ter. | middle | C-ter. | total | |||||
---|---|---|---|---|---|---|---|---|
deletion | 5800 | 15.2 % | 10769 | 28.2 % | 1001 | 2.6 % | 17570 | 46.0 % |
insertion | 680 | 1.8 % | 2621 | 6.9 % | 108 | 0.3 % | 3409 | 8.9 % |
substitution | 3993 | 10.5 % | 2417 | 6.3 % | 10771 | 28.2 % | 17181 | 45.0 % |
total | 10473 | 27.4 % | 15807 | 41.4 % | 11880 | 31.1 % | 38160 | 100.0 % |