Data source used in AS-ALPS

Transcript data for input
Genome NCBI RefSeq mRNA other transcript data total
version No. of data version No. of data data source
H.sapiens Ensembl rel. 62 31112 rel. 47 84617 Ensembl rel. 62 115729
M.musculus Ensembl rel. 62 25599 rel. 47 54587 Ensembl rel. 62 80186
D.melanogaster Ensembl rel. 62 21766 rel. 45 21899 Ensembl rel. 62 43665
C.elegans Ensembl rel. 62 23894 rel. 45 29872 Ensembl rel. 62 53766
A.thaliana TAIR 10 33200 rel. 47 35386 TAIR 10 68586
O.sativa TIGR 6.1 28392 rel. 47 67393 TIGR 6.1 95785
version total AS isoforms
Swiss-Prot Release 2012_06 50601

Database for annotaion
PDB InterPro KEGG
May. 7, 2012 Version 32.0 Aug. 26, 2011

H.sapiens
  No. %
AS variant clusters 12924  
AS variant clusters annotated with PDB data 6437 49.8 %
Unique AS regions 39837  
Unique AS regions annotated with PDB data 14686 36.9 %
  N-ter. middle C-ter. total
deletion 692117.4 % 1018925.6 % 4751.2 % 1758544.1 %
insertion 6481.6 % 26576.7 % 830.2 % 33888.5 %
substitution 38809.7 % 15583.9 % 1342633.7 % 1886447.4 %
total 1144928.7 % 1440436.2 % 1398435.1 % 39837100.0 %
M.musculus
  No. %
AS variant clusters 9488  
AS variant clusters annotated with PDB data 3999 42.1 %
Unique AS regions 20140  
Unique AS regions annotated with PDB data 6541 32.5 %
  N-ter. middle C-ter. total
deletion 292314.5 % 506425.1 % 2181.1 % 820540.7 %
insertion 4312.1 % 18018.9 % 370.2 % 226911.3 %
substitution 17278.6 % 10905.4 % 684934.0 % 966648.0 %
total 508125.2 % 795539.5 % 710435.3 % 20140100.0 %
D.melanogaster
  No. %
AS variant clusters 2569  
AS variant clusters annotated with PDB data 731 28.5 %
Unique AS regions 4194  
Unique AS regions annotated with PDB data 974 23.2 %
  N-ter. middle C-ter. total
deletion 80219.1 % 78118.6 % 200.5 % 160338.2 %
insertion 1714.1 % 45710.9 % 50.1 % 63315.1 %
substitution 73717.6 % 1774.2 % 104424.9 % 195846.7 %
total 171040.8 % 141533.7 % 106925.5 % 4194100.0 %
C.elegans
  No. %
AS variant clusters 4026  
AS variant clusters annotated with PDB data 861 21.4 %
Unique AS regions 6252  
Unique AS regions annotated with PDB data 1093 17.5 %
  N-ter. middle C-ter. total
deletion 135721.7 % 106417.0 % 370.6 % 245839.3 %
insertion 4316.9 % 72811.6 % 350.6 % 119419.1 %
substitution 85413.7 % 3255.2 % 142122.7 % 260041.6 %
total 264242.3 % 211733.9 % 149323.9 % 6252100.0 %
A.thaliana
  No. %
AS variant clusters 4745  
AS variant clusters annotated with PDB data 1593 33.6 %
Unique AS regions 6482  
Unique AS regions annotated with PDB data 1964 30.3 %
  N-ter. middle C-ter. total
deletion 69210.7 % 158924.5 % 510.8 % 233236.0 %
insertion 2533.9 % 118318.3 % 210.3 % 145722.5 %
substitution 5468.4 % 3755.8 % 177227.3 % 269341.5 %
total 149123.0 % 314748.5 % 184428.4 % 6482100.0 %
O.sativa
  No. %
AS variant clusters 8406  
AS variant clusters annotated with PDB data 2399 28.5 %
Unique AS regions 12488  
Unique AS regions annotated with PDB data 3169 25.4 %
  N-ter. middle C-ter. total
deletion 11459.2 % 131910.6 % 930.7 % 255720.5 %
insertion 12109.7 % 147211.8 % 680.5 % 275022.0 %
substitution 165813.3 % 4273.4 % 509640.8 % 718157.5 %
total 401332.1 % 321825.8 % 525742.1 % 12488100.0 %
Swiss-Prot
  No. %
AS variant clusters 14397  
AS variant clusters annotated with PDB data 6950 48.3 %
Unique AS regions 24629  
Unique AS regions annotated with PDB data 10027 40.7 %
  N-ter. middle C-ter. total
deletion 305512.4 % 917137.2 % 5142.1 % 1274051.7 %
insertion 2981.2 % 21458.7 % 540.2 % 249710.1 %
substitution 20398.3 % 20528.3 % 530121.5 % 939238.1 %
total 539221.9 % 1336854.3 % 586923.8 % 24629100.0 %